example dataset to test SIMLR large scale. This is a reduced version of the dataset from the work by Zeisel, Amit, et al.

data(ZeiselAmit)

Format

gene expression measurements of individual cells

Source

Zeisel, Amit, et al. "Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq." Science 347.6226 (2015): 1138-1142.

Value

list of 6: in_X = input dataset as an (m x n) gene expression measurements of individual cells, n_clust = number of clusters (number of distinct true labels), true_labs = ground true of cluster assignments for each of the n_clust clusters, seed = seed used to compute the results for the example, results = result by SIMLR for the inputs defined as described, nmi = normalized mutual information as a measure of the inferred clusters compared to the true labels